Bphy_5013 protein (Paraburkholderia phymatum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

Bphy_5013

KEGG: reu:Reut_A2150 hypothetical protein. (195 aa)

Predicted Functional Partners:

Bphy_5510

0.755

Bphy_1091

0.749

Bphy_4532

0.703

Bphy_1474

0.687

Bphy_1088

0.675

Bphy_1473

0.601

Bphy_4571

0.565

Bphy_5014

0.547

Bphy_5012

0.535

Bphy_1085

0.520

Your Current Organism:

Paraburkholderia phymatum

NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Bphy_1085	Bphy_1088	KEGG: reu:Reut_A1199 hypothetical protein.	KEGG: rme:Rmet_1758 hypothetical protein.	0.545
Bphy_1085	Bphy_1474	KEGG: reu:Reut_A1199 hypothetical protein.	KEGG: bxe:Bxe_A2128 hypothetical protein.	0.523
Bphy_1085	Bphy_5013	KEGG: reu:Reut_A1199 hypothetical protein.	KEGG: reu:Reut_A2150 hypothetical protein.	0.520
Bphy_1088	Bphy_1085	KEGG: rme:Rmet_1758 hypothetical protein.	KEGG: reu:Reut_A1199 hypothetical protein.	0.545
Bphy_1088	Bphy_1474	KEGG: rme:Rmet_1758 hypothetical protein.	KEGG: bxe:Bxe_A2128 hypothetical protein.	0.403
Bphy_1088	Bphy_4532	KEGG: rme:Rmet_1758 hypothetical protein.	KEGG: sus:Acid_5414 periplasmic protein-like protein.	0.545
Bphy_1088	Bphy_5013	KEGG: rme:Rmet_1758 hypothetical protein.	KEGG: reu:Reut_A2150 hypothetical protein.	0.675
Bphy_1091	Bphy_4532	KEGG: reu:Reut_A2151 hypothetical protein.	KEGG: sus:Acid_5414 periplasmic protein-like protein.	0.481
Bphy_1091	Bphy_4571	KEGG: reu:Reut_A2151 hypothetical protein.	PFAM: PGAP1 family protein; KEGG: bam:Bamb_5051 PGAP1 family protein.	0.564
Bphy_1091	Bphy_5013	KEGG: reu:Reut_A2151 hypothetical protein.	KEGG: reu:Reut_A2150 hypothetical protein.	0.749
Bphy_1473	Bphy_1474	KEGG: bxe:Bxe_A2129 hypothetical protein.	KEGG: bxe:Bxe_A2128 hypothetical protein.	0.914
Bphy_1473	Bphy_5013	KEGG: bxe:Bxe_A2129 hypothetical protein.	KEGG: reu:Reut_A2150 hypothetical protein.	0.601
Bphy_1474	Bphy_1085	KEGG: bxe:Bxe_A2128 hypothetical protein.	KEGG: reu:Reut_A1199 hypothetical protein.	0.523
Bphy_1474	Bphy_1088	KEGG: bxe:Bxe_A2128 hypothetical protein.	KEGG: rme:Rmet_1758 hypothetical protein.	0.403
Bphy_1474	Bphy_1473	KEGG: bxe:Bxe_A2128 hypothetical protein.	KEGG: bxe:Bxe_A2129 hypothetical protein.	0.914
Bphy_1474	Bphy_4532	KEGG: bxe:Bxe_A2128 hypothetical protein.	KEGG: sus:Acid_5414 periplasmic protein-like protein.	0.462
Bphy_1474	Bphy_5013	KEGG: bxe:Bxe_A2128 hypothetical protein.	KEGG: reu:Reut_A2150 hypothetical protein.	0.687
Bphy_1474	Bphy_5510	KEGG: bxe:Bxe_A2128 hypothetical protein.	KEGG: reh:H16_A2156 hypothetical protein.	0.421
Bphy_4532	Bphy_1088	KEGG: sus:Acid_5414 periplasmic protein-like protein.	KEGG: rme:Rmet_1758 hypothetical protein.	0.545
Bphy_4532	Bphy_1091	KEGG: sus:Acid_5414 periplasmic protein-like protein.	KEGG: reu:Reut_A2151 hypothetical protein.	0.481