STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bphy_5102TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_B1827 ABC amino acid transporter, inner membrane subunit. (250 aa)    
Predicted Functional Partners:
Bphy_5103
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_B1826 ABC amino acid transporter, ATPase subunit.
 
 0.989
Bphy_5100
PFAM: extracellular solute-binding protein family 3; KEGG: bxe:Bxe_B1829 ABC amino acid transporter, periplasmic ligand binding protein.
 
 0.976
Bphy_5101
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_B1828 ABC amino acid transporter, inner membrane subunit.
 
 
0.971
Bphy_1156
PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: reu:Reut_B3699 extracellular solute-binding protein, family 3.
  
 0.871
Bphy_1789
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A2925 ABC lysine/arginine/ornithine transporter, ATPase subunit.
  
 0.819
Bphy_2166
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A3393 ABC basic amino acid transporter, ATPase subunit.
  
 0.816
Bphy_5481
PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: bxe:Bxe_C1295 ABC polar amino acid family transporter, periplasmic ligand binding protein.
  
 0.798
Bphy_4198
PFAM: extracellular solute-binding protein family 3; KEGG: bxe:Bxe_B0208 ABC basic amino acid family transporter, periplasmic ligand binding protein; Belongs to the bacterial solute-binding protein 3 family.
  
 0.779
Bphy_0016
PFAM: extracellular solute-binding protein family 3; KEGG: bxe:Bxe_A4434 ABC amino acid transporter, periplasmic ligand binding protein; Belongs to the bacterial solute-binding protein 3 family.
  
 0.777
Bphy_3432
PFAM: extracellular solute-binding protein family 3; KEGG: bch:Bcen2424_0849 extracellular solute-binding protein, family 3; Belongs to the bacterial solute-binding protein 3 family.
  
 0.777
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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