Bphy_5285 protein (Paraburkholderia phymatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Bphy_5285

PFAM: glycosyl transferase group 1; KEGG: rso:RSc2271 hypothetical protein. (527 aa)

Predicted Functional Partners:

Bphy_5286

0.952

Bphy_5287

0.948

Bphy_5284

0.942

Bphy_5288

0.899

Bphy_5289

0.886

Bphy_5290

0.885

Bphy_1834

0.800

Bphy_1832

0.791

Bphy_1835

0.786

Bphy_1836

0.786

Your Current Organism:

Paraburkholderia phymatum

NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Bphy_1832	Bphy_1834	KEGG: bxe:Bxe_A2969 putative transmembrane protein.	KEGG: bxe:Bxe_A2971 putative transmembrane protein.	0.955
Bphy_1832	Bphy_1835	KEGG: bxe:Bxe_A2969 putative transmembrane protein.	KEGG: bxe:Bxe_A2972 putative transmembrane protein.	0.955
Bphy_1832	Bphy_1836	KEGG: bxe:Bxe_A2969 putative transmembrane protein.	KEGG: bxe:Bxe_A2973 hypothetical protein.	0.907
Bphy_1832	Bphy_5285	KEGG: bxe:Bxe_A2969 putative transmembrane protein.	PFAM: glycosyl transferase group 1; KEGG: rso:RSc2271 hypothetical protein.	0.791
Bphy_1832	Bphy_5286	KEGG: bxe:Bxe_A2969 putative transmembrane protein.	Hypothetical protein; KEGG: rso:RSc2272 probable transmembrane protein.	0.808
Bphy_1832	Bphy_5287	KEGG: bxe:Bxe_A2969 putative transmembrane protein.	KEGG: reh:H16_B2201 hypothetical protein.	0.808
Bphy_1832	Bphy_5288	KEGG: bxe:Bxe_A2969 putative transmembrane protein.	KEGG: rso:RSc2274 putative lipoprotein.	0.808
Bphy_1832	Bphy_5289	KEGG: bxe:Bxe_A2969 putative transmembrane protein.	PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: rso:RSc2275 putative signal peptide protein.	0.805
Bphy_1832	Bphy_5290	KEGG: bxe:Bxe_A2969 putative transmembrane protein.	KEGG: reh:H16_B2204 hypothetical protein.	0.800
Bphy_1834	Bphy_1832	KEGG: bxe:Bxe_A2971 putative transmembrane protein.	KEGG: bxe:Bxe_A2969 putative transmembrane protein.	0.955
Bphy_1834	Bphy_1835	KEGG: bxe:Bxe_A2971 putative transmembrane protein.	KEGG: bxe:Bxe_A2972 putative transmembrane protein.	0.955
Bphy_1834	Bphy_1836	KEGG: bxe:Bxe_A2971 putative transmembrane protein.	KEGG: bxe:Bxe_A2973 hypothetical protein.	0.906
Bphy_1834	Bphy_5284	KEGG: bxe:Bxe_A2971 putative transmembrane protein.	KEGG: rso:RSc2270 probable transmembrane protein.	0.807
Bphy_1834	Bphy_5285	KEGG: bxe:Bxe_A2971 putative transmembrane protein.	PFAM: glycosyl transferase group 1; KEGG: rso:RSc2271 hypothetical protein.	0.800
Bphy_1834	Bphy_5287	KEGG: bxe:Bxe_A2971 putative transmembrane protein.	KEGG: reh:H16_B2201 hypothetical protein.	0.812
Bphy_1834	Bphy_5288	KEGG: bxe:Bxe_A2971 putative transmembrane protein.	KEGG: rso:RSc2274 putative lipoprotein.	0.807
Bphy_1834	Bphy_5289	KEGG: bxe:Bxe_A2971 putative transmembrane protein.	PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: rso:RSc2275 putative signal peptide protein.	0.813
Bphy_1834	Bphy_5290	KEGG: bxe:Bxe_A2971 putative transmembrane protein.	KEGG: reh:H16_B2204 hypothetical protein.	0.797
Bphy_1835	Bphy_1832	KEGG: bxe:Bxe_A2972 putative transmembrane protein.	KEGG: bxe:Bxe_A2969 putative transmembrane protein.	0.955
Bphy_1835	Bphy_1834	KEGG: bxe:Bxe_A2972 putative transmembrane protein.	KEGG: bxe:Bxe_A2971 putative transmembrane protein.	0.955