STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bphy_5329KEGG: bxe:Bxe_B1199 procollagen-proline,2-oxoglutarate-4-dioxygenase; PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit. (305 aa)    
Predicted Functional Partners:
Bphy_3018
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
   
 
  0.902
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
     
  0.900
Bphy_3343
PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: bxe:Bxe_B1765 ornithine cyclodeaminase/Mu-crystallin family protein.
     
  0.900
Bphy_3344
PFAM: proline racemase; KEGG: bxe:Bxe_B1024 putative proline racemase; Belongs to the proline racemase family.
     
  0.900
Bphy_4667
PFAM: proline racemase; KEGG: bxe:Bxe_B0874 putative proline racemase; Belongs to the proline racemase family.
     
  0.900
Bphy_0113
SMART: transcription factor jumonji jmjC domain protein; KEGG: bxe:Bxe_A4326 hypothetical protein.
   
 0.754
Bphy_5373
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bxe:Bxe_B0218 TonB-dependent siderophore receptor.
  
  
 0.699
Bphy_5328
KEGG: bxe:Bxe_B1198 hypothetical protein.
       0.639
Bphy_5330
KEGG: bxe:Bxe_B2061 hypothetical protein.
       0.469
Bphy_4067
Chromosome segregation ATPase-like protein; KEGG: bxe:Bxe_B2767 hypothetical protein.
  
     0.442
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.