STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bphy_5508PFAM: protein of unknown function DUF344; KEGG: reu:Reut_B4193 protein of unknown function DUF344. (283 aa)    
Predicted Functional Partners:
ppa
Inorganic diphosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.
    
 0.910
Bphy_0889
PFAM: Ppx/GppA phosphatase; KEGG: bxe:Bxe_A1274 Ppx/GppA phosphatase.
 
 
 0.654
Bphy_1163
PFAM: protein of unknown function DUF465; KEGG: bxe:Bxe_B2645 hypothetical protein.
  
    0.611
Bphy_5509
KEGG: reh:H16_A1650 hypothetical protein.
       0.578
Bphy_3301
PFAM: 4-vinyl reductase 4VR; KEGG: bur:Bcep18194_B0573 4-vinyl reductase, 4VR.
   
    0.513
ppk
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.
 
   
 0.496
Bphy_1179
Hopanoid biosynthesis associated radical SAM protein HpnJ; KEGG: bxe:Bxe_A2062 putative methyltransferase, or Fe-S oxidoreductase; TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnJ; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
   
    0.424
Bphy_4173
PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: bxe:Bxe_C0261 putative radical SAM domain/B12 binding domain protein.
   
    0.424
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.