STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABI61970.1D-alanyl-D-alanine serine-type carboxypeptidase; Belongs to the peptidase S11 family. (419 aa)    
Predicted Functional Partners:
ABI61267.1
Multimodular transpeptidase-transglycosylase PBP 1A.
  
 
 0.912
ABI61179.1
Multimodular transpeptidase-transglycosylase PBP 1A.
     
 0.910
ABI61968.1
Membrane-bound lytic murein transglycosylase B.
 
   
 0.859
rlpA
Lipoprotein; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
  
  
 0.809
ABI62365.1
Cell elongation specific D,D-transpeptidase.
 
  
 0.748
ABI61971.1
Transcriptional regulator, TetR family.
       0.634
ABI61967.1
Hypothetical membrane spanning protein.
       0.543
ABI61976.1
DNase, TatD family.
  
    0.532
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
  
    0.526
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.521
Your Current Organism:
Granulibacter bethesdensis
NCBI taxonomy Id: 391165
Other names: G. bethesdensis CGDNIH1, Granulibacter bethesdensis CGDNIH1, Granulibacter bethesdensis str. CGDNIH1, Granulibacter bethesdensis strain CGDNIH1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.