Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABI61972.1 | ABI61974.1 | GbCGDNIH1_1074 | GbCGDNIH1_1076 | Hypothetical protein. | DNA polymerase III, delta' subunit. | 0.603 |
ABI61972.1 | ABI61976.1 | GbCGDNIH1_1074 | GbCGDNIH1_1078 | Hypothetical protein. | DNase, TatD family. | 0.603 |
ABI61972.1 | ABI61977.1 | GbCGDNIH1_1074 | GbCGDNIH1_1079 | Hypothetical protein. | Metal-dependent hydrolase. | 0.603 |
ABI61972.1 | metG | GbCGDNIH1_1074 | GbCGDNIH1_1077 | Hypothetical protein. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily. | 0.603 |
ABI61972.1 | tmk | GbCGDNIH1_1074 | GbCGDNIH1_1075 | Hypothetical protein. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.603 |
ABI61974.1 | ABI61972.1 | GbCGDNIH1_1076 | GbCGDNIH1_1074 | DNA polymerase III, delta' subunit. | Hypothetical protein. | 0.603 |
ABI61974.1 | ABI61976.1 | GbCGDNIH1_1076 | GbCGDNIH1_1078 | DNA polymerase III, delta' subunit. | DNase, TatD family. | 0.839 |
ABI61974.1 | ABI61977.1 | GbCGDNIH1_1076 | GbCGDNIH1_1079 | DNA polymerase III, delta' subunit. | Metal-dependent hydrolase. | 0.848 |
ABI61974.1 | metG | GbCGDNIH1_1076 | GbCGDNIH1_1077 | DNA polymerase III, delta' subunit. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily. | 0.825 |
ABI61974.1 | mltG | GbCGDNIH1_1076 | GbCGDNIH1_2207 | DNA polymerase III, delta' subunit. | Hypothetical membrane associated protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. | 0.406 |
ABI61974.1 | tmk | GbCGDNIH1_1076 | GbCGDNIH1_1075 | DNA polymerase III, delta' subunit. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.971 |
ABI61976.1 | ABI61972.1 | GbCGDNIH1_1078 | GbCGDNIH1_1074 | DNase, TatD family. | Hypothetical protein. | 0.603 |
ABI61976.1 | ABI61974.1 | GbCGDNIH1_1078 | GbCGDNIH1_1076 | DNase, TatD family. | DNA polymerase III, delta' subunit. | 0.839 |
ABI61976.1 | ABI61977.1 | GbCGDNIH1_1078 | GbCGDNIH1_1079 | DNase, TatD family. | Metal-dependent hydrolase. | 0.817 |
ABI61976.1 | ABI63110.1 | GbCGDNIH1_1078 | GbCGDNIH1_2212 | DNase, TatD family. | malonyl-CoA-[acyl-carrier-protein] transacylase. | 0.638 |
ABI61976.1 | lepA | GbCGDNIH1_1078 | GbCGDNIH1_1507 | DNase, TatD family. | GTP-binding protein lepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. | 0.604 |
ABI61976.1 | metG | GbCGDNIH1_1078 | GbCGDNIH1_1077 | DNase, TatD family. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily. | 0.969 |
ABI61976.1 | mltG | GbCGDNIH1_1078 | GbCGDNIH1_2207 | DNase, TatD family. | Hypothetical membrane associated protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. | 0.730 |
ABI61976.1 | rppH | GbCGDNIH1_1078 | GbCGDNIH1_1715 | DNase, TatD family. | Red blood cell invasion; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.862 |
ABI61976.1 | rsmA | GbCGDNIH1_1078 | GbCGDNIH1_2195 | DNase, TatD family. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.808 |
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