Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABI63291.1 | infB | GbCGDNIH1_2393 | GbCGDNIH1_2392 | Hypothetical cytosolic protein; LSU ribosomal protein L7AE. | Bacterial Protein Translation Initiation Factor 2 (IF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.998 |
| ABI63291.1 | nusA | GbCGDNIH1_2393 | GbCGDNIH1_2394 | Hypothetical cytosolic protein; LSU ribosomal protein L7AE. | N utilization substance protein A; Participates in both transcription termination and antitermination. | 0.980 |
| ABI63291.1 | rbfA | GbCGDNIH1_2393 | GbCGDNIH1_2391 | Hypothetical cytosolic protein; LSU ribosomal protein L7AE. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.888 |
| ABI63291.1 | rimM | GbCGDNIH1_2393 | GbCGDNIH1_1684 | Hypothetical cytosolic protein; LSU ribosomal protein L7AE. | 16S rRNA processing protein rimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.410 |
| ABI63291.1 | rimP | GbCGDNIH1_2393 | GbCGDNIH1_2395 | Hypothetical cytosolic protein; LSU ribosomal protein L7AE. | Hypothetical cytosolic protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.986 |
| ABI63291.1 | rplM | GbCGDNIH1_2393 | GbCGDNIH1_0965 | Hypothetical cytosolic protein; LSU ribosomal protein L7AE. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.998 |
| ABI63291.1 | rpsB | GbCGDNIH1_2393 | GbCGDNIH1_1279 | Hypothetical cytosolic protein; LSU ribosomal protein L7AE. | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.998 |
| ABI63291.1 | rpsJ | GbCGDNIH1_2393 | GbCGDNIH1_0553 | Hypothetical cytosolic protein; LSU ribosomal protein L7AE. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.998 |
| ABI63291.1 | rpsL | GbCGDNIH1_2393 | GbCGDNIH1_0550 | Hypothetical cytosolic protein; LSU ribosomal protein L7AE. | SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy. | 0.998 |
| ABI63291.1 | rsmA | GbCGDNIH1_2393 | GbCGDNIH1_2195 | Hypothetical cytosolic protein; LSU ribosomal protein L7AE. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.769 |
| infB | ABI63291.1 | GbCGDNIH1_2392 | GbCGDNIH1_2393 | Bacterial Protein Translation Initiation Factor 2 (IF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | Hypothetical cytosolic protein; LSU ribosomal protein L7AE. | 0.998 |
| infB | nusA | GbCGDNIH1_2392 | GbCGDNIH1_2394 | Bacterial Protein Translation Initiation Factor 2 (IF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | N utilization substance protein A; Participates in both transcription termination and antitermination. | 0.986 |
| infB | rbfA | GbCGDNIH1_2392 | GbCGDNIH1_2391 | Bacterial Protein Translation Initiation Factor 2 (IF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.983 |
| infB | rimM | GbCGDNIH1_2392 | GbCGDNIH1_1684 | Bacterial Protein Translation Initiation Factor 2 (IF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 16S rRNA processing protein rimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.507 |
| infB | rimP | GbCGDNIH1_2392 | GbCGDNIH1_2395 | Bacterial Protein Translation Initiation Factor 2 (IF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | Hypothetical cytosolic protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.939 |
| infB | rplM | GbCGDNIH1_2392 | GbCGDNIH1_0965 | Bacterial Protein Translation Initiation Factor 2 (IF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.966 |
| infB | rpsB | GbCGDNIH1_2392 | GbCGDNIH1_1279 | Bacterial Protein Translation Initiation Factor 2 (IF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.986 |
| infB | rpsJ | GbCGDNIH1_2392 | GbCGDNIH1_0553 | Bacterial Protein Translation Initiation Factor 2 (IF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.957 |
| infB | rpsL | GbCGDNIH1_2392 | GbCGDNIH1_0550 | Bacterial Protein Translation Initiation Factor 2 (IF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy. | 0.937 |
| nusA | ABI63291.1 | GbCGDNIH1_2394 | GbCGDNIH1_2393 | N utilization substance protein A; Participates in both transcription termination and antitermination. | Hypothetical cytosolic protein; LSU ribosomal protein L7AE. | 0.980 |
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