STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111149053YTH domain-containing protein 1 isoform X1. (745 aa)    
Predicted Functional Partners:
LOC111157351
Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]
    
 
 0.784
LOC111148694
Cleavage and polyadenylation specificity factor subunit 2.
    
 
 0.780
LOC111141740
Cleavage stimulation factor subunit 1.
    
 
 0.773
LOC111149507
Cleavage stimulation factor subunit 3.
    
 
 0.767
LOC111146725
Cleavage and polyadenylation specificity factor subunit 1.
    
 
 0.758
LOC111146983
Zinc finger CCCH domain-containing protein 13 isoform X1.
   
  
 0.752
LOC111158696
pre-mRNA-splicing regulator WTAP.
    
 
 0.748
LOC111157349
N6-adenosine-methyltransferase subunit METTL14 isoform X1; Belongs to the MT-A70-like family.
   
 
 0.746
LOC111153177
Heterogeneous nuclear ribonucleoproteins C1/C2 isoform X1.
   
 
 0.739
LOC111139261
RNA demethylase ALKBH5.
      
 0.733
Your Current Organism:
Enhydra lutris
NCBI taxonomy Id: 391180
Other names: E. lutris kenyoni, Enhydra lutris kenyoni
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