STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111151062TATA box-binding protein-associated factor RNA polymerase I subunit A. (450 aa)    
Predicted Functional Partners:
LOC111154456
TATA box-binding protein-associated factor RNA polymerase I subunit D.
    
 0.966
LOC111152909
TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X1.
    
 0.921
LOC111158703
TATA-box-binding protein.
    
 0.908
LOC111158064
Nucleolar transcription factor 1 isoform X1.
   
 0.785
LOC111140634
TATA box-binding protein-like protein 2.
    
 0.784
LOC111148018
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.716
LOC111156094
RNA polymerase I-specific transcription initiation factor RRN3 isoform X1.
    
 0.690
LOC111158476
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.665
LOC111145796
DNA-directed RNA polymerase I subunit RPA49 isoform X1.
     
 0.615
LOC111140920
Histidine triad nucleotide-binding protein 1.
    
 0.611
Your Current Organism:
Enhydra lutris
NCBI taxonomy Id: 391180
Other names: E. lutris kenyoni, Enhydra lutris kenyoni
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