Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABP89222.1 | ABP89223.1 | SSU05_0254 | SSU05_0255 | Hypothetical protein. | Predicted hydrolase of the HAD superfamily. | 0.801 |
ABP89222.1 | ABP90638.1 | SSU05_0254 | SSU05_1672 | Hypothetical protein. | Nicotinic acid phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family. | 0.593 |
ABP89222.1 | pyrD | SSU05_0254 | SSU05_0253 | Hypothetical protein. | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate. | 0.452 |
ABP89223.1 | ABP89222.1 | SSU05_0255 | SSU05_0254 | Predicted hydrolase of the HAD superfamily. | Hypothetical protein. | 0.801 |
ABP89223.1 | pyrD | SSU05_0255 | SSU05_0253 | Predicted hydrolase of the HAD superfamily. | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate. | 0.431 |
ABP90638.1 | ABP89222.1 | SSU05_1672 | SSU05_0254 | Nicotinic acid phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family. | Hypothetical protein. | 0.593 |
pyrD | ABP89222.1 | SSU05_0253 | SSU05_0254 | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate. | Hypothetical protein. | 0.452 |
pyrD | ABP89223.1 | SSU05_0253 | SSU05_0255 | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate. | Predicted hydrolase of the HAD superfamily. | 0.431 |