Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABP89705.1 | ABP90578.1 | SSU05_0739 | SSU05_1612 | Hypothetical protein. | Transcriptional accessory protein. | 0.631 |
ABP89705.1 | ABP90688.1 | SSU05_0739 | SSU05_1722 | Hypothetical protein. | Superfamily II DNA/RNA helicase, SNF2 family. | 0.517 |
ABP89705.1 | rpoA | SSU05_0739 | SSU05_0095 | Hypothetical protein. | DNA-directed RNA polymerase, alpha subunit/40 kD subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.773 |
ABP89705.1 | rpoB | SSU05_0739 | SSU05_0121 | Hypothetical protein. | DNA-directed RNA polymerase, beta subunit/140 kD subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.696 |
ABP89705.1 | rpoZ | SSU05_0739 | SSU05_0423 | Hypothetical protein. | DNA-directed RNA polymerase, subunit K/omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.645 |
ABP89931.1 | ABP90578.1 | SSU05_0965 | SSU05_1612 | Agglutinin receptor. | Transcriptional accessory protein. | 0.631 |
ABP89931.1 | ABP90688.1 | SSU05_0965 | SSU05_1722 | Agglutinin receptor. | Superfamily II DNA/RNA helicase, SNF2 family. | 0.517 |
ABP89931.1 | rpoA | SSU05_0965 | SSU05_0095 | Agglutinin receptor. | DNA-directed RNA polymerase, alpha subunit/40 kD subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.741 |
ABP89931.1 | rpoB | SSU05_0965 | SSU05_0121 | Agglutinin receptor. | DNA-directed RNA polymerase, beta subunit/140 kD subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.696 |
ABP89931.1 | rpoZ | SSU05_0965 | SSU05_0423 | Agglutinin receptor. | DNA-directed RNA polymerase, subunit K/omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.645 |
ABP90576.1 | ABP90577.1 | SSU05_1610 | SSU05_1611 | Hypothetical protein. | Uncharacterized protein conserved in bacteria; Belongs to the SprT family. | 0.627 |
ABP90576.1 | ABP90578.1 | SSU05_1610 | SSU05_1612 | Hypothetical protein. | Transcriptional accessory protein. | 0.628 |
ABP90576.1 | ABP90579.1 | SSU05_1610 | SSU05_1613 | Hypothetical protein. | Oxidoreductase, aldo/keto reductase family. | 0.510 |
ABP90576.1 | ABP90580.1 | SSU05_1610 | SSU05_1614 | Hypothetical protein. | Unknown protein. | 0.528 |
ABP90577.1 | ABP90576.1 | SSU05_1611 | SSU05_1610 | Uncharacterized protein conserved in bacteria; Belongs to the SprT family. | Hypothetical protein. | 0.627 |
ABP90577.1 | ABP90578.1 | SSU05_1611 | SSU05_1612 | Uncharacterized protein conserved in bacteria; Belongs to the SprT family. | Transcriptional accessory protein. | 0.829 |
ABP90577.1 | ABP90579.1 | SSU05_1611 | SSU05_1613 | Uncharacterized protein conserved in bacteria; Belongs to the SprT family. | Oxidoreductase, aldo/keto reductase family. | 0.678 |
ABP90577.1 | ABP90580.1 | SSU05_1611 | SSU05_1614 | Uncharacterized protein conserved in bacteria; Belongs to the SprT family. | Unknown protein. | 0.694 |
ABP90578.1 | ABP89705.1 | SSU05_1612 | SSU05_0739 | Transcriptional accessory protein. | Hypothetical protein. | 0.631 |
ABP90578.1 | ABP89931.1 | SSU05_1612 | SSU05_0965 | Transcriptional accessory protein. | Agglutinin receptor. | 0.631 |
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