STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP96273.1COG1186 Protein chain release factor B. (807 aa)    
Predicted Functional Partners:
EDP94481.1
Secreted protein containing N-terminal Zinc-dependent carboxypeptidase related domain; COG0541 Signal recognition particle GTPase.
  
     0.754
EDP95430.1
Secreted protein containing N-terminal Zinc-dependent carboxypeptidase related domain, putative; COG4365 Uncharacterized protein conserved in bacteria.
  
     0.646
EDP96274.1
L-allo-threonine aldolase.
       0.509
EDP95947.1
Mn2+/Fe2+ transporter, NRAMP family protein.
  
     0.508
EDP97087.1
Glycosyl hydrolase, BNR repeat-containing protein; COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor.
  
     0.507
EDP98144.1
Amidohydrolase; COG1228 Imidazolonepropionase and related amidohydrolases.
  
     0.504
EDP95038.1
Probable aminopeptidase fused to fibronectin type 3 domain; COG2234 Predicted aminopeptidases.
  
     0.480
EDP97980.1
Putative outer membrane protein, probably involved in nutrient binding.
  
     0.448
EDP97981.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.437
prfB
Peptide chain release factor RF-2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
  
    0.412
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida OT-1, Kordia algicida NBRC 10036, Kordia algicida OT-1, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.