STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP94173.1Hypothetical protein; COG1680 Beta-lactamase class C and other penicillin binding proteins. (375 aa)    
Predicted Functional Partners:
EDP95711.1
Serine/threonine protein kinase.
 
     0.712
EDP95709.1
Hypothetical protein; COG0702 Predicted nucleoside-diphosphate-sugar epimerases.
 
     0.705
EDP94174.1
Hypothetical protein.
       0.658
EDP95710.1
Beta-lactamase family protein; COG1680 Beta-lactamase class C and other penicillin binding proteins.
    
0.560
EDP95708.1
VatB; COG0110 Acetyltransferase (isoleucine patch superfamily).
 
     0.524
EDP97901.1
Fibronectin type III domain protein; COG5651 PPE-repeat proteins.
  
     0.514
guaA-2
GMP synthetase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
     
 0.504
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida OT-1, Kordia algicida NBRC 10036, Kordia algicida OT-1, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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