STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP95742.1COG1360 Flagellar motor protein. (286 aa)    
Predicted Functional Partners:
rpsA
30S ribosomal protein S1.
  
  0.836
EDP95925.1
Hypothetical protein; COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.
   
   0.778
pgk
Phosphoglycerate kinase; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
  
  0.750
EDP97681.1
COG1843 Flagellar hook capping protein.
  
  
 0.734
EDP96017.1
Hypothetical protein.
    
 
 0.640
EDP98078.1
Hypothetical protein.
  
  
 0.638
EDP96870.1
Putative LPS biosynthesis related dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
   
   0.618
EDP95497.1
COG0642 Signal transduction histidine kinase.
  
  
 0.600
EDP97206.1
Outer membrane protein, peptidoglycan-associated lipoprotein.
  
 0.587
EDP95903.1
OmpA/MotB; COG5651 PPE-repeat proteins.
  
  0.579
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida OT-1, Kordia algicida NBRC 10036, Kordia algicida OT-1, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.