STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP96116.1Peptidase S41; COG0793 Periplasmic protease. (497 aa)    
Predicted Functional Partners:
EDP96114.1
Hypothetical protein; COG0457 FOG: TPR repeat.
 
 
   0.755
EDP96113.1
Hypothetical protein.
 
     0.723
EDP96112.1
Hypothetical protein.
 
     0.701
EDP96115.1
Putative extracytoplasmic function alternative sigma factor; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.655
EDP95539.1
Hypothetical protein.
  
     0.563
EDP96100.1
Hypothetical protein; COG0513 Superfamily II DNA and RNA helicases.
  
     0.545
EDP96188.1
Putative aminodeoxychorismate lyase; COG1559 Predicted periplasmic solute-binding protein.
  
     0.519
argC
N-acetyl-gamma-glutamyl-phosphate reductase; COG2911 Uncharacterized protein conserved in bacteria.
  
     0.452
EDP94415.1
Gliding motility-related protein; COG0795 Predicted permeases.
  
 
   0.443
EDP97316.1
Hypothetical protein; COG3577 Predicted aspartyl protease.
  
     0.439
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida OT-1, Kordia algicida NBRC 10036, Kordia algicida OT-1, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.