STRINGSTRING
KAOT1_08609 protein (Kordia algicida) - STRING interaction network
"KAOT1_08609" - Uncharacterized protein in Kordia algicida
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KAOT1_08609Uncharacterized protein (277 aa)    
Predicted Functional Partners:
KAOT1_08614
ABC transporter, permease protein, putative (416 aa)
              0.885
KAOT1_08604
Response regulatory protein, sigma 54 related (387 aa)
              0.879
infB
Translation initiation factor IF-2 ; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex (938 aa)
       
      0.846
KAOT1_16508
tRNA-dihydrouridine synthase ; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines (330 aa)
       
      0.813
KAOT1_08619
ABC transporter, ATP-binding protein (309 aa)
              0.680
KAOT1_12797
Uncharacterized protein (697 aa)
     
      0.528
KAOT1_19837
Putative outer membrane transport/efflux protein (477 aa)
     
      0.525
KAOT1_18267
Outer membrane protein (475 aa)
     
      0.525
KAOT1_11316
Putative outer membrane lipoprotein (440 aa)
     
      0.525
KAOT1_08599
Uncharacterized protein (48 aa)
              0.469
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida, K. algicida OT-1, Kordia, Kordia Sohn et al. 2004, Kordia algicida, Kordia algicida OT-1, Kordia algicida Sohn et al. 2004, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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