STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP94904.1Hypothetical protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog. (176 aa)    
Predicted Functional Partners:
EDP94905.1
Hypothetical protein.
  
    0.828
EDP94903.1
RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
       0.705
EDP97612.1
Hypothetical protein; COG0001 Glutamate-1-semialdehyde aminotransferase.
  
     0.644
EDP95280.1
Hypothetical protein; COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III.
  
     0.602
EDP96702.1
Hypothetical protein.
  
     0.588
EDP97005.1
Hypothetical protein; COG0457 FOG: TPR repeat.
  
     0.584
argC
N-acetyl-gamma-glutamyl-phosphate reductase; COG2911 Uncharacterized protein conserved in bacteria.
  
     0.549
EDP96319.1
Hypothetical protein.
  
     0.538
EDP96112.1
Hypothetical protein.
  
     0.530
EDP97004.1
Hypothetical protein.
  
     0.524
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida OT-1, Kordia algicida NBRC 10036, Kordia algicida OT-1, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.