STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP95295.1Hypothetical protein; COG0419 ATPase involved in DNA repair. (186 aa)    
Predicted Functional Partners:
EDP95296.1
COG3210 Large exoproteins involved in heme utilization or adhesion.
 
     0.957
EDP95294.1
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.845
EDP95297.1
COG3210 Large exoproteins involved in heme utilization or adhesion.
 
     0.842
EDP96846.1
Hypothetical protein.
 
     0.720
EDP96984.1
TPR domain protein.
  
     0.662
EDP95262.1
Hypothetical protein; COG1091 dTDP-4-dehydrorhamnose reductase.
  
     0.643
EDP98534.1
Hypothetical protein; COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains.
  
     0.642
EDP95368.1
Hypothetical protein.
  
     0.592
EDP97466.1
Hypothetical protein.
  
     0.591
EDP95442.1
Hypothetical protein; COG2198 FOG: HPt domain.
  
     0.587
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida OT-1, Kordia algicida NBRC 10036, Kordia algicida OT-1, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.