STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP95296.1COG3210 Large exoproteins involved in heme utilization or adhesion. (363 aa)    
Predicted Functional Partners:
EDP95295.1
Hypothetical protein; COG0419 ATPase involved in DNA repair.
 
     0.957
EDP95297.1
COG3210 Large exoproteins involved in heme utilization or adhesion.
 
 
  0.913
EDP95294.1
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.909
EDP94232.1
Probable integral outer membrane protein; COG4773 Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid.
 
 
 0.650
EDP96447.1
COG3708 Uncharacterized protein conserved in bacteria.
  
     0.570
EDP95927.1
Hypothetical protein; COG1452 Organic solvent tolerance protein OstA.
  
     0.487
EDP94889.1
Hypothetical protein.
  
     0.462
EDP95866.1
Hypothetical protein.
  
     0.457
EDP96072.1
Hypothetical protein.
  
     0.448
EDP95368.1
Hypothetical protein.
  
     0.448
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida OT-1, Kordia algicida NBRC 10036, Kordia algicida OT-1, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.