STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP94356.1Glucose/galactose transporter. (440 aa)    
Predicted Functional Partners:
EDP96146.1
COG3537 Putative alpha-1,2-mannosidase.
 
     0.680
EDP94353.1
Hypothetical protein; COG1113 Gamma-aminobutyrate permease and related permeases.
       0.568
EDP94354.1
Hypothetical protein; COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
       0.568
ligA
DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
       0.568
EDP96147.1
beta-N-acetylhexosaminidase; COG3525 N-acetyl-beta-hexosaminidase.
 
   
 0.515
EDP94358.1
Twin-arginine translocation pathway signal; COG1446 Asparaginase.
       0.506
EDP96600.1
COG0477 Permeases of the major facilitator superfamily.
 
    0.477
EDP94495.1
Putative phosphatidylserine synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
    
  0.419
EDP96393.1
Hypothetical protein.
   
 
  0.418
EDP98026.1
Sugar transporter; COG0477 Permeases of the major facilitator superfamily.
 
    0.400
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida OT-1, Kordia algicida NBRC 10036, Kordia algicida OT-1, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.