STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP94565.1COG2035 Predicted membrane protein. (338 aa)    
Predicted Functional Partners:
EDP94564.1
COG0169 Shikimate 5-dehydrogenase.
       0.791
EDP94566.1
COG2035 Predicted membrane protein.
 
    
0.782
EDP94567.1
COG0457 FOG: TPR repeat.
       0.568
EDP94563.1
Hypothetical protein; COG0419 ATPase involved in DNA repair.
       0.522
EDP95204.1
Hypothetical protein.
  
     0.516
EDP97322.1
COG0811 Biopolymer transport proteins.
  
     0.465
EDP98265.1
TPR domain protein; COG0457 FOG: TPR repeat.
  
     0.456
EDP95999.1
Hypothetical protein; COG0760 Parvulin-like peptidyl-prolyl isomerase.
  
     0.439
EDP94382.1
Hypothetical protein.
  
     0.405
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida OT-1, Kordia algicida NBRC 10036, Kordia algicida OT-1, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.