STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP95482.1Hypothetical protein; COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis. (311 aa)    
Predicted Functional Partners:
EDP95480.1
Putative flippase; COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.
 
     0.896
EDP95481.1
WblQ protein; Belongs to the DegT/DnrJ/EryC1 family.
 
     0.855
EDP94226.1
Hypothetical protein; COG0438 Glycosyltransferase.
 
     0.775
EDP94224.1
Hypothetical protein; COG0438 Glycosyltransferase.
  
     0.749
EDP95479.1
Transferase hexapeptide repeat; COG0110 Acetyltransferase (isoleucine patch superfamily).
 
     0.718
EDP95292.1
Hypothetical protein; COG0283 Cytidylate kinase.
  
     0.621
EDP97979.1
COG4775 Outer membrane protein/protective antigen OMA87.
  
     0.572
EDP97400.1
Cyanophycin synthetase; COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes.
  
 
 0.569
EDP98309.1
Hypothetical protein.
  
     0.566
ileS
isoleucyl-tRNA synthetase; COG3292 Predicted periplasmic ligand-binding sensor domain.
  
     0.565
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida OT-1, Kordia algicida NBRC 10036, Kordia algicida OT-1, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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