STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
argSarginyl-tRNA synthetase; COG0500 SAM-dependent methyltransferases. (272 aa)    
Predicted Functional Partners:
EDP97713.1
Glycine dehydrogenase (decarboxylating), glycine cleavage system P-protein; Belongs to the GcvP family.
    
  0.666
carA
COG0505 Carbamoylphosphate synthase small subunit; Belongs to the CarA family.
       0.645
EDP94601.1
COG3321 Polyketide synthase modules and related proteins.
  
 
 0.634
EDP97944.1
Hypothetical protein; COG0148 Enolase.
       0.548
rplQ
COG0203 Ribosomal protein L17.
       0.470
guaA-2
GMP synthetase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
   
 
 0.418
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida OT-1, Kordia algicida NBRC 10036, Kordia algicida OT-1, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.