STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP98089.1Prephenate dehydrogenase. (1843 aa)    
Predicted Functional Partners:
EDP95394.1
Hypothetical protein; COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit.
  
     0.683
EDP95525.1
Hypothetical protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
  
     0.643
EDP97092.1
Hypothetical protein; COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
     0.628
EDP95357.1
Fibronectin, type III.
  
     0.624
EDP95358.1
Hypothetical protein; COG1858 Cytochrome c peroxidase.
  
     0.614
EDP97879.1
Hypothetical protein.
  
     0.602
EDP97880.1
Hypothetical protein.
  
     0.581
EDP94224.1
Hypothetical protein; COG0438 Glycosyltransferase.
  
     0.578
EDP96736.1
Hypothetical protein; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components.
  
     0.572
EDP98059.1
Hypothetical protein; COG0142 Geranylgeranyl pyrophosphate synthase.
  
     0.571
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida OT-1, Kordia algicida NBRC 10036, Kordia algicida OT-1, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.