STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP98553.1Hypothetical protein; COG0642 Signal transduction histidine kinase. (143 aa)    
Predicted Functional Partners:
EDP98413.1
Hypothetical protein; COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
  
     0.741
EDP97440.1
Hypothetical protein; COG5605 Predicted small integral membrane protein.
  
     0.731
EDP95280.1
Hypothetical protein; COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III.
  
     0.714
EDP96899.1
Hypothetical protein; COG0571 dsRNA-specific ribonuclease.
  
     0.699
EDP94232.1
Probable integral outer membrane protein; COG4773 Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid.
  
     0.681
EDP95620.1
COG4281 Acyl-CoA-binding protein.
  
     0.677
EDP96974.1
Hypothetical protein; COG0151 Phosphoribosylamine-glycine ligase.
  
     0.661
EDP96727.1
Hypothetical protein; COG0313 Predicted methyltransferases.
  
     0.653
EDP95823.1
Hypothetical protein; COG0686 Alanine dehydrogenase.
  
     0.647
EDP95026.1
Hypothetical protein; COG3279 Response regulator of the LytR/AlgR family.
  
     0.645
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida OT-1, Kordia algicida NBRC 10036, Kordia algicida OT-1, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.