STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP96618.1Putative cell wall-associated protein precursor. (1840 aa)    
Predicted Functional Partners:
EDP96619.1
COG3209 Rhs family protein.
 
     0.942
EDP94101.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
     0.777
EDP94441.1
COG3209 Rhs family protein.
 
     0.777
EDP97306.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
     0.777
EDP94448.1
COG1450 Type II secretory pathway, component PulD.
  
    0.774
EDP94108.1
Type II general secretion pathway (GSP) D protein; Belongs to the bacterial secretin family.
  
    0.771
EDP94105.1
Possible type II general secretion pathway (GSP) G protein.
  
     0.763
EDP94445.1
Possible type II general secretion pathway (GSP) G protein; COG0442 Prolyl-tRNA synthetase.
  
     0.763
EDP96617.1
Hypothetical protein; COG1505 Serine proteases of the peptidase family S9A.
       0.757
EDP94641.1
COG1459 Type II secretory pathway, component PulF.
  
     0.747
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida OT-1, Kordia algicida NBRC 10036, Kordia algicida OT-1, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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