STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP96885.1Hypothetical protein; COG3893 Inactivated superfamily I helicase. (921 aa)    
Predicted Functional Partners:
EDP96888.1
Putative helicase.
 
 
 0.998
EDP96884.1
COG1073 Hydrolases of the alpha/beta superfamily.
       0.801
EDP94563.1
Hypothetical protein; COG0419 ATPase involved in DNA repair.
  
     0.681
EDP96022.1
Hypothetical protein; COG1132 ABC-type multidrug transport system, ATPase and permease components.
  
     0.626
EDP96298.1
Hypothetical protein; COG0742 N6-adenine-specific methylase.
  
     0.617
pgk
Phosphoglycerate kinase; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
       0.587
EDP97466.1
Hypothetical protein.
  
     0.573
EDP98412.1
COG1587 Uroporphyrinogen-III synthase.
  
     0.546
EDP95818.1
Hypothetical protein; COG0506 Proline dehydrogenase.
  
     0.500
EDP97814.1
COG4775 Outer membrane protein/protective antigen OMA87.
  
     0.496
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida OT-1, Kordia algicida NBRC 10036, Kordia algicida OT-1, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.