Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
EDP96912.12-amino-3-ketobutyrate coenzyme A ligase. (465 aa)    
Predicted Functional Partners:
EDP96911.1
Hypothetical protein; COG3568 Metal-dependent hydrolase.
       0.757
EDP98269.1
Hypothetical protein; COG2378 Predicted transcriptional regulator.
 
     0.611
EDP98280.1
Hypothetical protein.
 
    0.583
EDP98293.1
Hypothetical protein.
   0.535
EDP98405.1
COG4339 Uncharacterized protein conserved in bacteria.
  
     0.488
EDP95996.1
Hypothetical protein; COG1196 Chromosome segregation ATPases.
  
 
   0.481
EDP98282.1
Hypothetical protein.
 
    0.481
EDP95856.1
DEAD/DEAH box helicase-like protein; COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.
   
  0.462
EDP95872.1
COG0513 Superfamily II DNA and RNA helicases.
   
  0.462
EDP96099.1
Putative RNA helicase dead-box protein; Belongs to the DEAD box helicase family.
   
  0.462
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida OT-1, Kordia algicida NBRC 10036, Kordia algicida OT-1, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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