STRINGSTRING
rtcB protein (Kordia algicida) - STRING interaction network
"rtcB" - RNA-splicing ligase RtcB in Kordia algicida
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtcBRNA-splicing ligase RtcB (465 aa)    
Predicted Functional Partners:
KAOT1_17148
Uncharacterized protein (435 aa)
              0.841
KAOT1_17163
Putative peptide chain release factor (198 aa)
 
   
  0.761
KAOT1_13667
Uncharacterized protein (337 aa)
 
          0.757
KAOT1_13722
Uncharacterized protein (419 aa)
 
        0.701
KAOT1_13732
Uncharacterized protein (353 aa)
 
        0.594
KAOT1_13787
Uncharacterized protein (394 aa)
 
   
  0.582
kptA
Probable RNA 2’-phosphotransferase ; Removes the 2’-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP- ribose 1’’-2’’-cyclic phosphate (APPR>P). May function as an ADP- ribosylase (179 aa)
 
        0.531
KAOT1_21497
Possible ATP-dependent RNA helicase (450 aa)
     
    0.494
KAOT1_11126
Putative ATP-dependent RNA helicase (411 aa)
     
    0.494
KAOT1_08018
Putative RNA helicase dead-box protein (591 aa)
     
    0.494
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida, K. algicida OT-1, Kordia, Kordia Sohn et al. 2004, Kordia algicida, Kordia algicida OT-1, Kordia algicida Sohn et al. 2004, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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