STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP96950.1Putative transporter. (423 aa)    
Predicted Functional Partners:
EDP96951.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
       0.588
EDP94601.1
COG3321 Polyketide synthase modules and related proteins.
    
 0.561
EDP96949.1
Alpha-glucosidase; COG0608 Single-stranded DNA-specific exonuclease.
       0.458
EDP96883.1
COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
  
     0.436
EDP94904.1
Hypothetical protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog.
  
     0.431
EDP98101.1
Hypothetical protein.
   
  0.408
EDP98102.1
Hypothetical protein; Belongs to the AB hydrolase superfamily. MetX family.
   
  0.408
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida OT-1, Kordia algicida NBRC 10036, Kordia algicida OT-1, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.