STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP97220.1Hypothetical protein; COG2151 Predicted metal-sulfur cluster biosynthetic enzyme. (108 aa)    
Predicted Functional Partners:
EDP97221.1
Hypothetical protein.
      0.949
EDP97234.1
Iron-regulated ABC transporter, ATP-binding protein; COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component.
  
 0.943
EDP97224.1
Cysteine desulfurase, SufS subfamily protein; COG0520 Selenocysteine lyase.
    0.937
EDP97236.1
Iron-regulated ABC transporter, membrane-spanning permease.
   
 0.931
EDP97233.1
Iron-regulated ABC transporter, membrane-spanning permease; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
   
 0.891
EDP97225.1
Cysteine desulfurase (SufS); COG0520 Selenocysteine lyase.
    0.879
EDP97219.1
Hypothetical protein; COG0642 Signal transduction histidine kinase.
       0.817
EDP96978.1
phenylacetate-CoA oxygenase, PaaK subunit; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
 
 0.772
EDP97579.1
Hypothetical protein.
  
 
 0.772
EDP97581.1
Hypothetical protein.
  
 
 0.678
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida OT-1, Kordia algicida NBRC 10036, Kordia algicida OT-1, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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