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KAOT1_19012 protein (Kordia algicida) - STRING interaction network
"KAOT1_19012" - Tyrosine type site-specific recombinase in Kordia algicida
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KAOT1_19012Tyrosine type site-specific recombinase (428 aa)    
Predicted Functional Partners:
KAOT1_10276
SpoOJ regulator protein (256 aa)
 
   
  0.684
aroB
3-dehydroquinate synthase (306 aa)
     
    0.679
KAOT1_09831
DNA repair protein RecN (240 aa)
 
 
  0.648
KAOT1_09826
DNA repair protein (288 aa)
 
 
  0.643
ruvB
Holliday junction ATP-dependent DNA helicase RuvB ; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing (340 aa)
 
 
  0.586
ruvC
Holliday junction resolvase RuvC ; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5’-terminal phosphate and a 3’-terminal hydroxyl group (191 aa)
 
 
  0.578
KAOT1_19017
Uncharacterized protein (194 aa)
              0.537
KAOT1_19022
Uncharacterized protein (88 aa)
              0.533
topA
DNA topoisomerase I ; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (837 aa)
 
     
  0.521
KAOT1_20787
Ribonuclease HII ; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (198 aa)
 
          0.512
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida, K. algicida OT-1, Kordia, Kordia Sohn et al. 2004, Kordia algicida, Kordia algicida OT-1, Kordia algicida Sohn et al. 2004, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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