STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP97585.1Hypothetical protein; COG1024 Enoyl-CoA hydratase/carnithine racemase. (123 aa)    
Predicted Functional Partners:
EDP96994.1
Hypothetical protein; COG0056 F0F1-type ATP synthase, alpha subunit.
  
     0.762
EDP97032.1
Hypothetical protein; COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit.
  
     0.747
EDP97584.1
enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.631
EDP97586.1
3-hydroxybutyryl-CoA dehydrogenase.
       0.460
EDP97583.1
Hypothetical protein.
       0.435
EDP97587.1
Hypothetical protein; COG1250 3-hydroxyacyl-CoA dehydrogenase.
 
     0.431
EDP94262.1
Intervening sequence, 23S rRNA; COG0381 UDP-N-acetylglucosamine 2-epimerase.
  
     0.419
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida OT-1, Kordia algicida NBRC 10036, Kordia algicida OT-1, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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