STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP95557.1Peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysin; COG1876 D-alanyl-D-alanine carboxypeptidase. (243 aa)    
Predicted Functional Partners:
EDP97030.1
COG5009 Membrane carboxypeptidase/penicillin-binding protein.
     
 0.863
EDP95558.1
WD40-like beta propeller repeat protein; COG0823 Periplasmic component of the Tol biopolymer transport system.
       0.773
EDP95556.1
Hypothetical protein; COG0501 Zn-dependent protease with chaperone function.
 
     0.697
EDP98470.1
Hypothetical protein; COG0782 Transcription elongation factor.
  
     0.596
EDP96323.1
Hypothetical protein; COG1193 Mismatch repair ATPase (MutS family).
  
     0.593
EDP95559.1
YitI; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
       0.591
EDP97706.1
Hypothetical protein.
  
     0.563
EDP97609.1
Hemagglutinin; COG1705 Muramidase (flagellum-specific).
    
 0.448
EDP95252.1
Hypothetical protein; COG0542 ATPases with chaperone activity, ATP-binding subunit.
  
     0.431
EDP95040.1
Hypothetical protein.
  
     0.429
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida OT-1, Kordia algicida NBRC 10036, Kordia algicida OT-1, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.