STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP95699.1Hypothetical protein; COG0744 Membrane carboxypeptidase (penicillin-binding protein). (311 aa)    
Predicted Functional Partners:
EDP95700.1
Outer membrane protein, peptidoglycan-associated lipoprotein; COG0457 FOG: TPR repeat.
 
     0.941
EDP95698.1
Secreted trypsin-like serine protease.
 
     0.864
EDP97206.1
Outer membrane protein, peptidoglycan-associated lipoprotein.
  
     0.744
EDP96984.1
TPR domain protein.
  
   
 0.721
EDP97680.1
Possible gliding motility-related protein; possible serine kinase.
 
     0.685
EDP95369.1
Hypothetical protein.
  
     0.680
EDP98203.1
COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
 
     0.679
EDP98218.1
Hypothetical protein; COG0137 Argininosuccinate synthase.
  
     0.674
apaG
ApaG; COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport.
  
     0.656
EDP97428.1
Gliding motility-related protein; COG0632 Holliday junction resolvasome, DNA-binding subunit.
  
   
 0.643
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida OT-1, Kordia algicida NBRC 10036, Kordia algicida OT-1, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.