Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EEB85295.1 | tag | RGAI101_2446 | RGAI101_1192 | [T] COG2200 FOG: EAL domain. | [L] COG2818 3-methyladenine DNA glycosylase. | 0.681 |
EEB86158.1 | tag | RGAI101_3314 | RGAI101_1192 | NADPH dehydrogenase; [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family. | [L] COG2818 3-methyladenine DNA glycosylase. | 0.547 |
polA | tag | RGAI101_2484 | RGAI101_1192 | DNA polymerase I superfamily protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | [L] COG2818 3-methyladenine DNA glycosylase. | 0.652 |
tag | EEB85295.1 | RGAI101_1192 | RGAI101_2446 | [L] COG2818 3-methyladenine DNA glycosylase. | [T] COG2200 FOG: EAL domain. | 0.681 |
tag | EEB86158.1 | RGAI101_1192 | RGAI101_3314 | [L] COG2818 3-methyladenine DNA glycosylase. | NADPH dehydrogenase; [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family. | 0.547 |
tag | polA | RGAI101_1192 | RGAI101_2484 | [L] COG2818 3-methyladenine DNA glycosylase. | DNA polymerase I superfamily protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.652 |