STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yibQYibQ protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (469 aa)    
Predicted Functional Partners:
EEB84877.1
Conserved hypothetical protein.
  
     0.742
EEB84825.1
Lipoprotein, putative; Overlaps another CDS with the same product name.
  
     0.721
EEB83459.1
Conserved hypothetical protein.
  
     0.712
trpD
Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
     
 0.710
EEB85140.1
Lipoprotein, putative.
  
     0.704
EEB84711.1
Anthranilate synthase component 2; [F] COG0518 GMP synthase - Glutamine amidotransferase domain.
       0.703
trpC
[E] COG0134 Indole-3-glycerol phosphate synthase; Belongs to the TrpC family.
       0.703
EEB84320.1
Conserved hypothetical protein.
  
     0.682
EEB83343.1
TPR domain protein; [R] COG0457 FOG: TPR repeat.
  
     0.676
EEB83818.1
Conserved hypothetical protein; [U] COG4961 Flp pilus assembly protein TadG.
  
     0.675
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.