STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEB82989.1[T] COG0589 Universal stress protein UspA and related nucleotide-binding proteins. (135 aa)    
Predicted Functional Partners:
ccoP
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
  
    0.547
ccoN
[C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1; Belongs to the heme-copper respiratory oxidase family.
  
    0.532
ccoO
[C] COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit.
  
    0.521
ccoQ
[O] COG4736 Cbb3-type cytochrome oxidase, subunit 3.
  
    0.516
fnrL
[T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.
  
    0.513
dskA
[T] COG1734 DnaK suppressor protein.
 
  
 0.488
hemN
[H] COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
    0.449
EEB83057.1
Conserved hypothetical protein; [S] COG3016 Uncharacterized iron-regulated protein.
  
     0.421
ccoG
Cytochrome c oxidase accessory protein CcoG; [C] COG0348 Polyferredoxin.
  
    0.416
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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