node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rplD | rplF | RGAI101_2277 | RGAI101_2361 | Ribosomal protein, L4/L1 family; Forms part of the polypeptide exit tunnel. | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.999 |
rplD | rplJ | RGAI101_2277 | RGAI101_1230 | Ribosomal protein, L4/L1 family; Forms part of the polypeptide exit tunnel. | [J] COG0244 Ribosomal protein L10. | 0.999 |
rplD | rplM | RGAI101_2277 | RGAI101_1661 | Ribosomal protein, L4/L1 family; Forms part of the polypeptide exit tunnel. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
rplD | rplN | RGAI101_2277 | RGAI101_2125 | Ribosomal protein, L4/L1 family; Forms part of the polypeptide exit tunnel. | Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.999 |
rplD | rplP | RGAI101_2277 | RGAI101_1602 | Ribosomal protein, L4/L1 family; Forms part of the polypeptide exit tunnel. | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.999 |
rplD | rplU | RGAI101_2277 | RGAI101_1629 | Ribosomal protein, L4/L1 family; Forms part of the polypeptide exit tunnel. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.998 |
rplD | rplX | RGAI101_2277 | RGAI101_2062 | Ribosomal protein, L4/L1 family; Forms part of the polypeptide exit tunnel. | Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.999 |
rplD | rpmD | RGAI101_2277 | RGAI101_1353 | Ribosomal protein, L4/L1 family; Forms part of the polypeptide exit tunnel. | Ribosomal protein L30; [O] COG1225 Peroxiredoxin. | 0.999 |
rplD | rpoC | RGAI101_2277 | RGAI101_2357 | Ribosomal protein, L4/L1 family; Forms part of the polypeptide exit tunnel. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
rplD | rpsI | RGAI101_2277 | RGAI101_1048 | Ribosomal protein, L4/L1 family; Forms part of the polypeptide exit tunnel. | [J] COG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.998 |
rplF | rplD | RGAI101_2361 | RGAI101_2277 | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Ribosomal protein, L4/L1 family; Forms part of the polypeptide exit tunnel. | 0.999 |
rplF | rplJ | RGAI101_2361 | RGAI101_1230 | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | [J] COG0244 Ribosomal protein L10. | 0.999 |
rplF | rplM | RGAI101_2361 | RGAI101_1661 | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
rplF | rplN | RGAI101_2361 | RGAI101_2125 | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.999 |
rplF | rplP | RGAI101_2361 | RGAI101_1602 | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.999 |
rplF | rplU | RGAI101_2361 | RGAI101_1629 | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.998 |
rplF | rplX | RGAI101_2361 | RGAI101_2062 | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.999 |
rplF | rpmD | RGAI101_2361 | RGAI101_1353 | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Ribosomal protein L30; [O] COG1225 Peroxiredoxin. | 0.999 |
rplF | rpoC | RGAI101_2361 | RGAI101_2357 | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
rplF | rpsI | RGAI101_2361 | RGAI101_1048 | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | [J] COG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.998 |