STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEB84513.11-deoxy-D-xylulose-5-phosphate synthase; [G] COG0021 Transketolase. (343 aa)    
Predicted Functional Partners:
EEB86160.1
Transketolase; [C] COG2609 Pyruvate dehydrogenase complex, dehydrogenase (E1) component.
 0.999
EEB84342.1
3-oxoacyl-(acyl-carrier-protein) reductase; [P] COG0288 Carbonic anhydrase.
 
     0.917
EEB85611.1
Transketolase; [HI] COG1154 Deoxyxylulose-5-phosphate synthase; Belongs to the transketolase family.
  
 
0.860
tal
Transaldolase, putative; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
 
 
 0.825
rpe
[G] COG0036 Pentose-5-phosphate-3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
 
 0.823
pdhB
Pyruvate dehydrogenase complex, E1 component, beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
    
  0.755
EEB85236.1
Dehydrogenase/transketolase family protein; [C] COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit.
    
  0.749
EEB84850.1
Transcriptional regulatory protein; [K] COG0583 Transcriptional regulator.
  
     0.746
rpiA
Ribose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
    
 0.744
tkt
Transketolase; [HI] COG1154 Deoxyxylulose-5-phosphate synthase; Belongs to the transketolase family.
  
 
 0.741
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.