STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hppD[ER] COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins. (364 aa)    
Predicted Functional Partners:
hmgA
[Q] COG3508 Homogentisate 1,2-dioxygenase.
 
 0.996
tyrB
[E] COG1448 Aspartate/tyrosine/aromatic aminotransferase.
  
 
 0.961
EEB86421.1
4-hydroxyphenylpyruvate dioxygenase; [G] COG1082 Sugar phosphate isomerases/epimerases.
 
  
0.864
maiA
Maleylacetoacetate isomerase; [O] COG0625 Glutathione S-transferase.
 
  
 0.851
EEB83372.1
Aliphatic nitrilase; [R] COG0388 Predicted amidohydrolase.
   
 0.828
phhB
[H] COG2154 Pterin-4a-carbinolamine dehydratase.
  
  
 0.826
EEB84932.1
[I] COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.
    
 0.813
EEB83201.1
[I] COG2185 Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding).
    
 0.813
EEB83560.1
[I] COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
  
 
 0.803
fahA
Fumarylacetoacetase; [Q] COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
 
  
 0.780
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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