STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB84623.1HAD-superfamily hydrolase, subfamily IA, variant 1; [R] COG0637 Predicted phosphatase/phosphohexomutase. (221 aa)    
Predicted Functional Partners:
gph_2
Phosphoglycolate phosphatase, bacterial; [R] COG0637 Predicted phosphatase/phosphohexomutase.
  
  
  0.882
crcB
crcB protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
 
    0.870
rluC
23S rRNA pseudouridylate synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
  
    0.852
EEB83519.1
HAD-superfamily hydrolase, subfamily IA, variant 1 family protein; [R] COG0637 Predicted phosphatase/phosphohexomutase.
  
  
  0.852
EEB84215.1
ATP12 ATPase; [O] COG5387 Chaperone required for the assembly of the mitochondrial F1-ATPase.
       0.844
glcF
Glycolate oxidase, iron-sulfur subunit; [C] COG0247 Fe-S oxidoreductase.
    
 0.831
glcE
Glycolate oxidase, subunit GlcE; [C] COG0277 FAD/FMN-containing dehydrogenases.
    
 0.829
EEB86195.1
Glyoxylate reductase; [CHR] COG1052 Lactate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
  
  0.771
EEB83181.1
ATPase, AAA family; [L] COG0470 ATPase involved in DNA replication.
       0.768
EEB86496.1
Glyoxylate reductase; [HE] COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
  0.737
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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