STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
paaB_2enoyl-CoA hydratase/isomerase family protein; [I] COG1024 Enoyl-CoA hydratase/carnithine racemase. (258 aa)    
Predicted Functional Partners:
EEB85511.1
[I] COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
  0.863
fixL
Sensor histidine kinase; [T] COG2202 FOG: PAS/PAC domain.
   
 0.852
EEB84670.1
[I] COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
    
0.836
bhbD
[I] COG1250 3-hydroxyacyl-CoA dehydrogenase.
 0.829
paaJ
phenylacetate-CoA oxygenase, PaaJ subunit; [R] COG2151 Predicted metal-sulfur cluster biosynthetic enzyme.
 
 
 0.774
EEB85232.1
PAS/PAC sensor hybrid histidine kinase; [T] COG2202 FOG: PAS/PAC domain.
   
 0.761
gfdS
Signal transduction histidine kinase; [T] COG2202 FOG: PAS/PAC domain.
   
 0.761
paaN
Phenylacetic acid degradation protein paaN; [C] COG1012 NAD-dependent aldehyde dehydrogenases.
 
 0.757
rpsI
[J] COG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
    
  0.728
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
    
  0.728
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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