STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EEB85095.1Multidrug resistance protein B, putative; [GEPR] COG0477 Permeases of the major facilitator superfamily. (515 aa)    
Predicted Functional Partners:
EEB83103.1
Multidrug resistance efflux pump; [M] COG0845 Membrane-fusion protein.
 
 0.986
EEB82784.1
[V] COG1566 Multidrug resistance efflux pump.
 
 0.937
EEB84467.1
Type I secretion outer membrane protein, TolC family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
 0.713
EEB82576.1
RND efflux system, outer membrane lipoprotein, NodT family; [V] COG1566 Multidrug resistance efflux pump; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.671
EEB84589.1
Membrane protein of uknown function; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
       0.586
EEB82717.1
Efflux transporter, RND family, MFP subunit; [M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 0.517
EEB83791.1
Outer membrane efflux protein.
   
  0.516
EEB84745.1
Short-chain dehydrogenase/reductase SDR; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.511
adc
Putative acetoacetate decarboxylase; Catalyzes the conversion of acetoacetate to acetone and carbon dioxide; Belongs to the ADC family.
 
     0.506
EEB82769.1
RND transporter, HAE1 family; [V] COG0841 Cation/multidrug efflux pump.
  
  
 0.500
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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