STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEB83095.1FeS assembly SUF system protein; [R] COG2151 Predicted metal-sulfur cluster biosynthetic enzyme. (121 aa)    
Predicted Functional Partners:
sufC
FeS assembly ATPase SufC; [R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase.
 
  
 0.852
EEB83384.1
Putative reductive dehalogenase subfamily protein; [C] COG1600 Uncharacterized Fe-S protein.
  
 
 0.849
EEB85046.1
Nitrogen-fixing NifU domain protein; [C] COG0822 NifU homolog involved in Fe-S cluster formation.
 
  
 0.846
sufB
FeS assembly protein SufB; [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
   
 0.825
EEB83374.1
FeS assembly protein SufD, putative; [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
   
 0.821
EEB85045.1
ferredoxin:Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region; [C] COG0633 Ferredoxin.
  
 
 0.816
csdB
Selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
  
 0.757
boxB
benzoyl-CoA oxygenase, B subunit; [S] COG3396 Uncharacterized conserved protein.
  
 
 0.691
rimK
[HJ] COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase).
       0.649
EEB85762.1
[C] COG0584 Glycerophosphoryl diester phosphodiesterase.
       0.587
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.