STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEB85329.1Complex I intermediate-associated protein 30; [MG] COG0702 Predicted nucleoside-diphosphate-sugar epimerases. (158 aa)    
Predicted Functional Partners:
EEB84884.1
Rhodanese domain protein; [O] COG0625 Glutathione S-transferase.
       0.773
EEB83062.1
Auxin efflux carrier family protein; [R] COG0679 Predicted permeases.
       0.773
dacF
[M] COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
  
 0.669
EEB84436.1
[S] COG3011 Uncharacterized protein conserved in bacteria.
 
     0.626
EEB82994.1
Penicillin-binding protein; [M] COG0744 Membrane carboxypeptidase (penicillin-binding protein).
   
 0.589
mrdA
Penicillin-binding protein 2; [M] COG0768 Cell division protein FtsI/penicillin-binding protein 2.
   
 0.589
dacC
[M] COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
  
 
 0.576
EEB83361.1
Putative deoxyribonuclease YcfH; [L] COG0084 Mg-dependent DNase.
  
    0.546
EEB86517.1
Beta-lactamase domain protein; [R] COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I.
  
    0.544
EEB83900.1
Deoxyribodipyrimidine photo-lyase, putative; [L] COG0415 Deoxyribodipyrimidine photolyase.
  
     0.541
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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