STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEB85516.1[EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components. (488 aa)    
Predicted Functional Partners:
EEB83967.1
Oligopeptide/dipeptide ABC transporter, permease protein; [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
  0.972
EEB83282.1
Oligopeptide/dipeptide transporter domain family protein; [R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.
 
  0.956
EEB85285.1
Twin-arginine translocation pathway signal; [E] COG0747 ABC-type dipeptide transport system, periplasmic component.
  
  0.834
EEB83154.1
[E] COG4583 Sarcosine oxidase gamma subunit.
  
     0.740
EEB85227.1
[EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; overlaps another CDS with the same product name.
  
  0.732
EEB85478.1
Trimethylamine methyltransferase family protein; [S] COG1385 Uncharacterized protein conserved in bacteria; Belongs to the trimethylamine methyltransferase family.
  
     0.712
EEB83562.1
[EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
  0.710
EEB84314.1
Oligopeptide/dipeptide ABC transporter, ATPase subunit; [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
  
  0.708
EEB83862.1
[EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
  0.696
EEB86479.1
Peptide ABC transporter, ATP-binding protein; [E] COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.
  
  0.693
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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