STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB83124.1NLP/P60; [M] COG0791 Cell wall-associated hydrolases (invasion-associated proteins). (251 aa)    
Predicted Functional Partners:
pepA_2
[E] COG0260 Leucyl aminopeptidase; Belongs to the peptidase M17 family.
       0.756
fliL
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
   
   0.657
EEB84134.1
Conserved hypothetical protein.
       0.645
EEB85046.1
Nitrogen-fixing NifU domain protein; [C] COG0822 NifU homolog involved in Fe-S cluster formation.
  
   
 0.616
EEB84848.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.593
EEB83549.1
2'-deoxycytidine 5'-triphosphate deaminase; [F] COG0717 Deoxycytidine deaminase.
  
     0.560
EEB83420.1
Hypothetical protein; [S] COG3785 Uncharacterized conserved protein; hemimethylated DNA-binding region.
  
     0.536
EEB84128.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.493
EEB85827.1
Carbonate dehydratase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
       0.489
EEB84294.1
[S] COG5508 Uncharacterized conserved small protein.
  
     0.484
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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