STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exoQExopolysaccharide production protein; [M] COG3307 Lipid A core - O-antigen ligase and related enzymes. (435 aa)    
Predicted Functional Partners:
EEB85601.1
[M] COG1596 Periplasmic protein involved in polysaccharide export.
 
  
 0.893
EEB84658.1
Chain length determinant protein; [M] COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
 
  
 0.861
EEB86302.1
Undecaprenyl-phosphate galactose phosphotransferase; [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
 
  
 0.741
EEB82974.1
Glycosyl transferase, group 1; [M] COG0438 Glycosyltransferase.
 
 
 0.696
EEB83661.1
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; [M] COG0836 Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.690
EEB84191.1
Glycosyl transferase, family 2; [R] COG0780 Enzyme related to GTP cyclohydrolase I.
  
 
 0.683
EEB83936.1
Cadherin domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.653
EEB85565.1
Serralysin; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.629
EEB84684.1
[M] COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
  
 0.613
EEB83020.1
Polysaccharide biosynthesis protein; [R] COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.
 
  
 0.600
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.