Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EEB83135.1Transcriptional regulatory protein; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (299 aa)    
Predicted Functional Partners:
EEB85318.1
Hypothetical protein; [S] COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain; cupin 2, conserved barrel.
 
    0.653
EEB83666.1
Transcriptional regulatory protein; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.636
EEB82423.1
Transcriptional regulator, LysR family; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.517
EEB83278.1
Alcohol dehydrogenase, zinc-binding domain protein; [ER] COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
 
     0.513
EEB82450.1
LysR substrate binding domain protein; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.505
EEB85973.1
[GEPR] COG0477 Permeases of the major facilitator superfamily.
       0.484
EEB85495.1
Transcriptional regulator, LysR family; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.450
EEB83769.1
Drug resistance MFS transporter; [GEPR] COG0477 Permeases of the major facilitator superfamily.
       0.434
gcvA
Regulator of gcv operon (LysR family); [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.433
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 
 0.432
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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